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Monthly Archives: October 2015

Deep Learning, Digital Histology

Use Case 2: Epithelium Segmentation

October 28, 2015 choosehappy 12 Comments

This blog posts explains how to train a deep learning epithelium segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.

Continue reading Use Case 2: Epithelium Segmentation →

caffedeep learningepithelium segmentationhistologymatlabpythontutorialuse cases
Deep Learning, Digital Histology

Use Case 1: Nuclei Segmentation

October 22, 2015 choosehappy 68 Comments

This blog posts explains how to train a deep learning nuclear segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.

Continue reading Use Case 1: Nuclei Segmentation →

caffedeep learningmatlabnuclei segmentationpythontutorialuse cases

Tidbits from along the way

Recent Posts

  • Converting an existing image into an Openslide compatible format
  • Exporting and re-importing annotations from QuPath for usage in machine learning
  • Computationally creating a PowerPoint presentation of experimental results using Python
  • SDiPath – Introduction to Computational Pathology for Pathologists
  • Employing the albumentation library in PyTorch workflows. Bonus: Helper for selecting appropriate values!

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  • Sadhish Valavan on Converting an existing image into an Openslide compatible format
  • choosehappy on About Me
  • Aleksandra Zuraw on About Me
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  • Markemus on Converting an existing image into an Openslide compatible format

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