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Monthly Archives: October 2015

Deep Learning, Digital Histology

Use Case 2: Epithelium Segmentation

October 28, 2015 choosehappy 12 Comments

This blog posts explains how to train a deep learning epithelium segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.

Continue reading Use Case 2: Epithelium Segmentation →

caffedeep learningepithelium segmentationhistologymatlabpythontutorialuse cases
Deep Learning, Digital Histology

Use Case 1: Nuclei Segmentation

October 22, 2015 choosehappy 74 Comments

This blog posts explains how to train a deep learning nuclear segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.

Continue reading Use Case 1: Nuclei Segmentation →

caffedeep learningmatlabnuclei segmentationpythontutorialuse cases

Tidbits from along the way

Recent Posts

  • Using Paquo to directly interact with QuPath project files for usage in digital pathology machine learning
  • Tutorial: Quick Annotator for Tubule Segmentation
  • Transferring data FASTER to the GPU With Compression
  • De-array a Tissue Microarray (TMA) using QuPath and Python
  • The noise in our digital pathology slides

Recent Comments

  • choosehappy on HistoQC: An open-source quality control tool for digital pathology slides
  • raniachk on HistoQC: An open-source quality control tool for digital pathology slides
  • choosehappy on De-array a Tissue Microarray (TMA) using QuPath and Python
  • kossi FIANKO on De-array a Tissue Microarray (TMA) using QuPath and Python
  • choosehappy on HistoQC: An open-source quality control tool for digital pathology slides

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