This blog posts explains how to train a deep learning epithelium segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.
Category Archives: Deep Learning
Use Case 1: Nuclei Segmentation
This blog posts explains how to train a deep learning nuclear segmentation classifier in accordance with our paper “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases”.
Installing Caffe on the Ohio Super Computing (OSC) Ruby Cluster
One of the perks of working at Case Western Reserve is that we often qualify for access to cutting edge resource and special projects. In this case, since our digital histology deep learning work requires a large number of GPUs to analyze thousands of patients, we were granted access to the OSC Ruby cluster, which has 20 NVIDIA Tesla K40 GPUs. Since the cluster has only recently been setup, there was some leg work required on our end to get Caffe fully up and running, without root access, which we’ll document here.
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