Tag Archives: histology

Exporting from Matlab To PowerPoint

Reviewing the results of an image based experiment, across many images, can be annoying in matlab. Too much clicking!

I’ve recently started using PowerPoint to view many of my results. This blog posts discuss how using the free export to PowerPoint toolbox it is possible to create a slide desk with all relevant information for easier viewing. It looks like this:


image1_annotated_trimmed

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Working with Aperio SVS files in Matlab – Converting Annotations to Binary Masks

One of the main purposes of having a digital format is to allow experts (e.g., pathologists) to annotate certain structures in the images. Be it nuclei, epithelium/stroma regions, tumor/non-tumor tissue etc. This is easily done with ImageScope and SVS files, but the trick is importing them into Matlab.
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